MmuEX6011428 @ mm9
Exon Skipping
Gene
ENSMUSG00000030510 | Lass3
Description
LAG1 homolog, ceramide synthase 3 [Source:MGI Symbol;Acc:MGI:2681008]
Coordinates
chr7:73926680-73929755:+
Coord C1 exon
chr7:73926680-73926737
Coord A exon
chr7:73928288-73928338
Coord C2 exon
chr7:73929663-73929755
Length
51 bp
Sequences
Splice sites
3' ss Seq
CGGCTTCCTTTGTGTTTCAGAAA
3' ss Score
10.16
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CTGGCGATTTACATTTTACTTGCTGATAACCATGGCTGGAGCTGTATTTCTGTATGAC
Seq A exon
AAACCATGGGCATATGACCTCTGGGAGGTTTGGAATGACTATCCCAGACAG
Seq C2 exon
CCTTTGCTGCCGTCCCAGTACTGGTACTACATTTTGGAGATGAGTTTTTATTGGTCACTGGTGTTTAGCCTGAGCACTGATATCAAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030510-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTGATAACCATGGCTGGA
R:
TTCCTCTTGATATCAGTGCTCAGG
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: