GgaEX1014925 @ galGal4
Exon Skipping
Gene
ENSGALG00000014624 | CERS3
Description
ceramide synthase 3 [Source:HGNC Symbol;Acc:HGNC:23752]
Coordinates
chr10:16799306-16801646:-
Coord C1 exon
chr10:16801589-16801646
Coord A exon
chr10:16800671-16800721
Coord C2 exon
chr10:16799306-16799398
Length
51 bp
Sequences
Splice sites
3' ss Seq
GAATCATCTGTCTTTCCCAGAAG
3' ss Score
7.1
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTGGAGATTTTCATTCTATTTCACATCCTCCATTGCTGGATTTATATTTCTGCATGAT
Seq A exon
AAGCCTTGGTTTTACGATATATGGCAGACGTGGGTTGGCTATCCATTTCAG
Seq C2 exon
ACTTTGCTGCCATCTCAGTATTGGTACTACATGGCTGAGATTAGTTTCTACTGGTCTCTCTTATTTACACTTGGGATCGATACCAAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014624_MULTIEX1-5/10=4-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(11.4=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCACATCCTCCATTGCTGG
R:
TTTCTTTTGGTATCGATCCCAAGTGT
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]