DreEX0021063 @ danRer10
Exon Skipping
Gene
ENSDARG00000036337 | cers3b
Description
ceramide synthase 3b [Source:ZFIN;Acc:ZDB-GENE-080220-32]
Coordinates
chr18:7358100-7361368:+
Coord C1 exon
chr18:7358100-7358157
Coord A exon
chr18:7360327-7360377
Coord C2 exon
chr18:7361276-7361368
Length
51 bp
Sequences
Splice sites
3' ss Seq
GTTATTGTTTTGTTCAACAGAAA
3' ss Score
7.68
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CTGGCGGTTTGCCTTTTATCTGTGCTCGACTTTTGGAGGAGTACTGGCTCTATATGAT
Seq A exon
AAACCATGGTTTTATGATCTACGTGAAGTGTGGGCGAAATTTCCCAAACAA
Seq C2 exon
TCATTGCTGGACTCTCAATACTGGTATTACATCACTGAGATGAGTTTTTATGGTTCTTTACTGTTCAGTGTGGCTGCAGACGTAAAACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036337_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF101834=ESSS=FE(18.4=100),PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
A:
PF101834=ESSS=PD(11.7=70.6),PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGCTCGACTTTTGGAGG
R:
TTCCGTTTTACGTCTGCAGCC
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]