RnoEX0020304 @ rn6
Exon Skipping
Gene
ENSRNOG00000021138 | Cers2
Description
ceramide synthase 2 [Source:RGD Symbol;Acc:1310059]
Coordinates
chr2:196493542-196494015:+
Coord C1 exon
chr2:196493542-196493599
Coord A exon
chr2:196493689-196493739
Coord C2 exon
chr2:196493923-196494015
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTTAATCTCTCTCTTTGCAGAAA
3' ss Score
12.38
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
CTGGAGATTCACATATTACCTCATTGCCTTTGTTGCTGGCATGGCTGTCACTGTGGAT
Seq A exon
AAACCCTGGTTCTATGACTTGAGGAAAGTTTGGGAAGGATATCCCATACAG
Seq C2 exon
AGTATCATCCCTTCTCAGTATTGGTACTACATGATTGAGCTTGCTTTCTACTGGTCCCTGCTCTTCAGCATTGCCTCCGATGTCAAGCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021138-'16-11,'16-10,17-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATTGCCTTTGTTGCTGGC
R:
CTTTCGCTTGACATCGGAGGC
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]