MmuEX0026157 @ mm9
Exon Skipping
Gene
ENSMUSG00000015714 | Lass2
Description
LAG1 homolog, ceramide synthase 2 [Source:MGI Symbol;Acc:MGI:1924143]
Coordinates
chr3:95125112-95125589:+
Coord C1 exon
chr3:95125112-95125169
Coord A exon
chr3:95125258-95125308
Coord C2 exon
chr3:95125497-95125589
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTTAATCTCTCTCTTTGCAGAAA
3' ss Score
12.38
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
CTGGAGATTCACGTATTACCTAATTGCCTTTGTTGCTGGCATGGCTGTCACTGTGGAT
Seq A exon
AAACCCTGGTTCTATGACTTAAGGAAAGTTTGGGAGGGATATCCCATACAG
Seq C2 exon
AGCATCATCCCTTCTCAGTATTGGTACTACATGATTGAACTTTCCTTCTACTGGTCCCTGCTCTTCAGCATTGCCTCTGATGTCAAGCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015714_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF067897=UPF0258=PD(18.4=90.0),PF0379811=TRAM_LAG1_CLN8=FE(21.3=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAATTGCCTTTGTTGCTGGC
R:
TTTCGCTTGACATCAGAGGCA
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: