HsaEX6033431 @ hg19
Exon Skipping
Gene
ENSG00000143418 | LASS2
Description
ceramide synthase 2 [Source:HGNC Symbol;Acc:14076]
Coordinates
chr1:150939868-150940353:-
Coord C1 exon
chr1:150940296-150940353
Coord A exon
chr1:150940140-150940190
Coord C2 exon
chr1:150939868-150939960
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTCTCACCATCTCTCTGCAGAAA
3' ss Score
10.27
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
CTGGAGATTCACATTTTACCTGATTGCCTTCATTGCCGGCATGGCCGTCATTGTGGAT
Seq A exon
AAACCCTGGTTCTATGACATGAAGAAAGTTTGGGAGGGATATCCCATACAG
Seq C2 exon
AGCACTATCCCTTCCCAGTATTGGTACTACATGATTGAACTTTCCTTCTACTGGTCCCTGCTCTTCAGCATTGCCTCTGATGTCAAGCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143418-'11-13,'11-11,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PU(2.9=83.3)
A:
PF0379811=TRAM_LAG1_CLN8=FE(13.6=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGATTGCCTTCATTGCCG
R:
TTCGCTTGACATCAGAGGCAA
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)