BtaEX6015134 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000099 | CERS2
Description
Bos taurus ceramide synthase 2 (CERS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034667]
Coordinates
chr3:19841004-19841558:+
Coord C1 exon
chr3:19841004-19841061
Coord A exon
chr3:19841178-19841228
Coord C2 exon
chr3:19841466-19841558
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTATTACCATTTCTCTGCAGAAA
3' ss Score
9.65
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
CTGGAGATTCACATTTTACCTGATTGCTTTCATCGCCGGCACGGCCGTCATTGTAGAC
Seq A exon
AAACCCTGGTTCTATGACCTGAGGAAAGTTTGGGAGGGATATCCCATACAG
Seq C2 exon
AGCATCATCCCTTCCCAGTATTGGTACTACATGATTGAACTGTCTTTCTACTGGTCCTTGCTCTTCAGCATTGCTTCTGACGTCAAGCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000099-'16-8,'16-7,17-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGATTGCTTTCATCGCCG
R:
TTCGCTTGACGTCAGAAGCAA
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]