DreEX6003778 @ danRer10
Exon Skipping
Gene
ENSDARG00000078541 | CERS3 (2 of 2)
Description
ceramide synthase 3 [Source:HGNC Symbol;Acc:HGNC:23752]
Coordinates
chr7:9687744-9690451:+
Coord C1 exon
chr7:9687744-9687801
Coord A exon
chr7:9688837-9688887
Coord C2 exon
chr7:9690359-9690451
Length
51 bp
Sequences
Splice sites
3' ss Seq
GACTTATCTGTTTTTCACAGAAA
3' ss Score
8.57
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
TTGGCGAATGATCTTTTATCTGTTGGCATTCATTGGAGGAATCATAGCTTTGTATGAT
Seq A exon
AAACCCTGGTTTTACAATGTGCCTGAAGTGTGGAGTGACTATCCGAAACAG
Seq C2 exon
TCCATGTTAGACTCACAGTATTGGTATTATACTGTGGAGATGAGTTTCTATTTATCGCTTGTTCTCAGAATAACCTTCGATGTCAAACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078541-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTTGGCATTCATTGGAGGA
R:
CTTTCGTTTGACATCGAAGGTT
Band lengths:
133-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]