GgaEX1014925 @ galGal3
Exon Skipping
Gene
ENSGALG00000014624 | F1N8P2_CHICK
Description
NA
Coordinates
chr10:19418480-19420824:-
Coord C1 exon
chr10:19420767-19420824
Coord A exon
chr10:19419845-19419895
Coord C2 exon
chr10:19418480-19418572
Length
51 bp
Sequences
Splice sites
3' ss Seq
GAATCATCTGTCTTTCCCAGAAG
3' ss Score
7.1
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTGGAGATTTTCATTCTATTTCACATCCTCCATTGCTGGATTTATATTTCTGCATGAT
Seq A exon
AAGCCTTGGTTTTATGATATATGGCAGACGTGGGTTGGCTATCCATTTCAG
Seq C2 exon
ACTTTGCTGCCATCTCAGTATTGGTACTACATGGCTGAGATTAGTTTCTACTGGTCTCTCTTATTTACACTTGGGATCGATACCAAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014624-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(16.2=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(13.7=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(25.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCACATCCTCCATTGCTGG
R:
TTTCTTTTGGTATCGATCCCAAGTGT
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]