BtaEX6076494 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006987 | LASS3
Description
Bos taurus ceramide synthase 3 (CERS3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099389]
Coordinates
chr21:6320878-6328607:+
Coord C1 exon
chr21:6320878-6320935
Coord A exon
chr21:6321620-6321670
Coord C2 exon
chr21:6328515-6328607
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTGGTTCCTTGCTTTTTCAGAAA
3' ss Score
10.52
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CTGGCGATTTACATTTTACCTAATTATTACCATTGCTGGAATTGCATTTCTTTATGAT
Seq A exon
AAACCTTGGGTATATGACCTGTGGGAAGTTTGGAAGGGCTATCCCAGACAG
Seq C2 exon
CCCTTGCTGCCATCCCAGTACTGGTACTACATTTTGGAGATGAGTTTTTATTGGTCTCTCTTATTTAGCCTTGGCTCTGATATCAAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006987-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTAATTATTACCATTGCTGGAATT
R:
TTCTCTTGATATCAGAGCCAAGGC
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]