DreEX6072070 @ danRer10
Exon Skipping
Gene
ENSDARG00000013704 | cers2a
Description
ceramide synthase 2a [Source:ZFIN;Acc:ZDB-GENE-020808-2]
Coordinates
chr19:8866541-8870527:-
Coord C1 exon
chr19:8870470-8870527
Coord A exon
chr19:8868689-8868739
Coord C2 exon
chr19:8866541-8866633
Length
51 bp
Sequences
Splice sites
3' ss Seq
ATGTTGTTTGTATTCCTCAGAAA
3' ss Score
8.6
5' ss Seq
CTGGTATGC
5' ss Score
6.73
Exon sequences
Seq C1 exon
TTGGAGATTTACCTTTTACCTTGTTGCTTTCATTGCTGGCCTTGCTGCACTTATTGAT
Seq A exon
AAACCTTGGTTCTACGATACGAAGGAGATGTGGGCAGGGTTTCCAGTGCTG
Seq C2 exon
CCGCTGTTGCCTTCTCAGTACTGGTACTACATGATTGAACTAGGGTTTTACATGTCTCTCCTCTTCAGCGTCGCATCAGACGTCAAGCGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013704-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(16.4=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(13.8=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGTTGCTTTCATTGCTGGC
R:
TTTCGCTTGACGTCTGATGCG
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]