MmuEX6013575 @ mm9
Exon Skipping
Gene
ENSMUSG00000030945 | Acsm2
Description
acyl-CoA synthetase medium-chain family member 2 [Source:MGI Symbol;Acc:MGI:2385289]
Coordinates
chr7:126726220-126734668:+
Coord C1 exon
chr7:126726220-126726300
Coord A exon
chr7:126732335-126732436
Coord C2 exon
chr7:126734541-126734668
Length
102 bp
Sequences
Splice sites
3' ss Seq
CAATCTTCCTCCTCCTTCAGGTC
3' ss Score
11.33
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
GGACTTATCTGCAGAGTTTCCAGGACAATGAAAGTCAAACCAGGCTACCTGGGAACAGCCTTTGCTCACTATGATGTACAG
Seq A exon
GTCATAGATGAGCAGGGCAATGTTCTGCCCCCTGGCAAGGAAGGAGACATAGCTATCAGGGTGAAGCCCATCTGGCCTATCGGCATGTTCTCTGGATATGTG
Seq C2 exon
GACAATCCCAAGAAGACACAGGATAATATTCGAGGAGACTTTTGGCTTATGGGAGACCGGGGAATCAAGGATCCAGAAGGGTATTTCCACTTCATAGGGCGGTCAGACGATATCATTAATTCCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030945-'12-18,'12-15,13-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.005
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(18.1=100)
A:
PF0050123=AMP-binding=FE(22.9=100)
C2:
PF0050123=AMP-binding=PD(62.1=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTATCTGCAGAGTTTCCAGG
R:
AATTAATGATATCGTCTGACCGCCC
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: