MmuEX6013575 @ mm10
Exon Skipping
Gene
ENSMUSG00000030945 | Acsm2
Description
acyl-CoA synthetase medium-chain family member 2 [Source:MGI Symbol;Acc:MGI:2385289]
Coordinates
chr7:119582706-119591154:+
Coord C1 exon
chr7:119582706-119582786
Coord A exon
chr7:119588821-119588922
Coord C2 exon
chr7:119591027-119591154
Length
102 bp
Sequences
Splice sites
3' ss Seq
CAATCTTCCTCCTCCTTCAGGTC
3' ss Score
11.33
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
GGACTTATCTGCAGAGTTTCCAGGACAATGAAAGTCAAACCAGGCTACCTGGGAACAGCCTTTGCTCACTATGATGTACAG
Seq A exon
GTCATAGATGAGCAGGGCAATGTTCTGCCCCCTGGCAAGGAAGGAGACATAGCTATCAGGGTGAAGCCCATCTGGCCTATCGGCATGTTCTCTGGATATGTG
Seq C2 exon
GACAATCCCAAGAAGACACAGGATAATATTCGAGGAGACTTTTGGCTTATGGGAGACCGGGGAATCAAGGATCCAGAAGGGTATTTCCACTTCATAGGGCGGTCAGACGATATCATTAATTCCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030945-'24-28,'24-24,27-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.005
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(29.0=100)
A:
PF0050123=AMP-binding=FE(39.8=100)
C2:
PF0050123=AMP-binding=PD(62.1=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTATCTGCAGAGTTTCCAGG
R:
AATTAATGATATCGTCTGACCGCCC
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types