RnoEX0006226 @ rn6
Exon Skipping
Gene
ENSRNOG00000042084 | Acsm2
Description
acyl-CoA synthetase medium-chain family member 2 [Source:RGD Symbol;Acc:708383]
Coordinates
chr1:189315316-189323243:+
Coord C1 exon
chr1:189315316-189315396
Coord A exon
chr1:189321008-189321109
Coord C2 exon
chr1:189323116-189323243
Length
102 bp
Sequences
Splice sites
3' ss Seq
CAATCTTCCCCTTCCTTCAGGTC
3' ss Score
11.85
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
GGAATTACCTGCAGAGTTTCTAGGACAATGAAAGTCAAACCAGGCTACCTGGGAACAGCCATTGTCCCTTATGATGTCCAG
Seq A exon
GTCATAGATGAGCAGGGCAATGTCCTGCCCCCTGGCAAGGAAGGAGACATGGCTCTCAGGGTGAAGCCCATCAGGCCTATAGGCATGTTCTCTGGATATGTG
Seq C2 exon
GACAATCCCAAGAAGACACAGGCTAATATTCGAGGAGACTTTTGGCTTCTGGGAGACCGGGGAATTAAGGATACAGAAGGGTATTTCCACTTCATGGGACGGACAGACGATATCATTAATTCCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042084_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.088 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(8.0=100)
C2:
PF0050123=AMP-binding=PD(9.9=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCAGAGTTTCTAGGACA
R:
CCACTGGAATTAATGATATCGTCTGT
Band lengths:
203-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]