MmuEX6014004 @ mm10
Exon Skipping
Gene
ENSMUSG00000030757 | Zkscan2
Description
zinc finger with KRAB and SCAN domains 2 [Source:MGI Symbol;Acc:MGI:2444060]
Coordinates
chr7:123484940-123494932:-
Coord C1 exon
chr7:123494806-123494932
Coord A exon
chr7:123489579-123490262
Coord C2 exon
chr7:123484940-123485431
Length
684 bp
Sequences
Splice sites
3' ss Seq
ATATATTTCTCTTACTGTAGGAG
3' ss Score
7.55
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GAACCAATAAGAGATGTCCACACAGAGAGAAGCTTTTCCTACAAAAAAAGTGTACAGCAAGTTCCGGCGCACAGAGGTCTCTACCACGAAATCAGGAAGGAAAGTGCAGGGAGCATGGTTTCCCTGG
Seq A exon
GAGACTCTGTGTCTGCACCTAACAAAATAGCCCAGTTGGAACAAAAAAAGGAACCATGGAGCGTAGGTCTTCATTCCTCAAACAAGAGGAATAGTGTCCTGCAAAGCAACTACATCAAAGAGAAGTCGGTCCATGCTGTTCAGATCCCAGCTAGGAATGCAGGGAAAGTGTGGCGAGAGCAGCAACAGTGGGGTTTGGAAGATGAAAAGATTGCAGGTGTGCACTGGAGCTATGAAGAAACCAAGACTTTTCTTGCAATTCTCAAGGAATCTCGCTTTTATGAAACACTCCAGGCTTGTCCCCGAAATAGCCAGGTATATGGTGCTGTGGCTGAATGGTTGCGAGAATGTGGCTTCCTCCGAACACCAGAGCAGTGCCGGACCAAGTTCAAAAGTCTTCAGAAGAGTTATCGAAAAGTGAGAAATGGCCACATGCTAGAACCCTGTGCCTTCTTTGAGGACATGGATGCCTTGTTAAACCCTGCAGCCCACACTTCATCTACTGAGAGGCCAAAGGTTGTGATCTCTCTCCCACTAAAGAGAACTGCTATTAGTGCTAAAGAGCAGGTCAGTTTGGTGGAGGAGGAGGAAGGTGCTGAAGACTCCGATGGTGATGAAGTGGGCATTGAGTTTATACGCAAGTCTGAAATCCGTGCTGCCCCTGTCTTATTTCAAAACCTAAGTG
Seq C2 exon
GTGTGCATTGGGGCTATGAAGAAACCAAGACTTTTCTTGATATCCTTCAAGAGACCCGATTTTATGAAGCACTTCAAGCCTGCCATCGGAAGAGCAAATTGTATGGAGTCGTGGCTGAACAACTTCGAGAATGTGGCTTTCTCCGGACACCAGAGCAATGCCGAACCAAGTTCAAAAGCCTTCAGAAGAGTTACCGAAAAGTGAAGAATGGCCATGTACTGGAGTCCTGTGCATTTTACAAGGAGATGGATGCCCTGGTTAACTGCCGTCCATCCTCCCTTTCCACCAACACCTCAGAAGAAGTCCCATCCCTCTCAAGGCAGGAAAGGGGACATATTGAGGTTGAACCCCGAGAGCCTACAACCTGGGAACCTGTGGAGACCCCACAGGAAGCAGTGTTAGAAGATTCTGGCAGTGAGAGACTGAGTGAGGAGGAAATGATAGAAGAGCCAGAACTTGAAGGACCTTCAGGCCTGCTGCAAAGCCCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030757-'4-6,'4-4,7-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=0.085 C2=0.421
Domain overlap (PFAM):
C1:
NO
A:
PF138371=Myb_DNA-bind_4=WD(100=37.6),PF138371=Myb_DNA-bind_4=PU(0.1=0.0)
C2:
PF138371=Myb_DNA-bind_4=WD(100=52.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGTACAGCAAGTTCCGGC
R:
GATGGACGGCAGTTAACCAGG
Band lengths:
354-1038
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types