RnoEX0101929 @ rn6
Exon Skipping
Gene
ENSRNOG00000024245 | Zkscan2
Description
zinc finger with KRAB and SCAN domains 2 [Source:RGD Symbol;Acc:1359568]
Coordinates
chr1:193443883-193454154:-
Coord C1 exon
chr1:193454028-193454154
Coord A exon
chr1:193448706-193449389
Coord C2 exon
chr1:193443883-193444374
Length
684 bp
Sequences
Splice sites
3' ss Seq
ATATATTTCTTTTACTGTAGGAG
3' ss Score
7.83
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GAGCCAGTGAGAGATATCCACACGGTGAGAAGCTTTCCCTACAAAAGGAGTGTACAGCAAGTTCCTGCTCACAGAGATCTCTACCATGAAATCAGGAAGGAAAGTGCATGCAGCGTGGTTTCCCTGG
Seq A exon
GAGACACTGTGTCTGCACCTAACAAAATAGCCCAGTTGGAACAAAAAAAGGAACCATGGACTGTAGGTCTACATTCCTCAAATAAGAGGACTAGTGTCCTGCAAAGCAAAATCAGCAAAGAGAAGTCAGTGCACGCTGTTCAGATCCCAGCAAGGAATGCAGGGAAAGTGTGGCGAGAGCAGCAACAGTGGGGTTTAGAAGATGAAAAAATTGCAGGTGTGCACTGGAGCTATGAAGAAACCAAGACTTTTCTTGCGATTCTCAAGGAATCTCGCTTTTATGAAACACTCCAGGCTTGTCCCCGAAATAGCCAGGTGTATGGTGCTGTGGCTGAATGGTTGCGAGAATGTGGCTTCCTCAGAACACCAGAGCAGTGCCGGACCAAGTTCAAAAGTCTTCAGAAGAGTTATCGAAAAGTGAGAAATGGTCACATGCTAGAACCCTGTGCCTTCTTTGAGGACATGGATGCCTTGCTAAATCCTGAAGCCCACACTTCGTCTACTGAGAGGCCAAAGGCCGTGATCTCTCTCCCACTAAAGAGAACTGCTGTTAGTGCTAAAGAGCAGGTCAGTTTGGTGGAGGAGGAGGAAGGTGCTGAAGACTCTGATGGCGATGAAGTGGGCATTGAGTTTGTACGCAAGTCTGAAATCCGTGCTGCCCCTATCTTGTTTCAAAACCTGAGTG
Seq C2 exon
GTGTGCATTGGGGCTATGAAGAAACCAAGACCTTTCTTGATATCCTTCAAGAGACACGATTTTATGAAGCACTTCAAGCCTGTCATCGGAAGAGCAAATTGTATGGAGTTGTGGCTGAACAACTTCGAGAGTGTGGCTTTCTGCGAACACCAGAGCAATGCCGAACCAAGTTCAAAAGCCTCCAGAAGAGTTACCGAAAAGTGAAGAATGGCCATGTACTGGAGTCCTGTGCTTTTTACAAGGAGATGGATGCCCTGGTGAACTGCCGTACAGCTGCCCTTCCCACCAACACCTCAGAAGAAATCCCATCACTCTCAAGGCAAGAAAGGGGACATATTGAGGTTGAACCCCAAGAGCCTACAACCTGGGAACCTGAGGAGAGCTCACAGGAGGCGGTGTTAGAAGATTCTGGCAGTGAGAGAATGAGTGAGGAGGAAATTACAGAAGAGCCAGAATTCGAAGGATCTGCAGGCCTGCCGCAGAGCCCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024245_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=0.092 C2=0.424
Domain overlap (PFAM):
C1:
NO
A:
PF138371=Myb_DNA-bind_4=WD(100=37.6),PF138371=Myb_DNA-bind_4=PU(0.1=0.0)
C2:
PF138371=Myb_DNA-bind_4=WD(100=52.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACAGCAAGTTCCTGCTCAC
R:
CAGTTCACCAGGGCATCCATC
Band lengths:
342-1026
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]