MmuEX6015333 @ mm9
Exon Skipping
Gene
ENSMUSG00000025515 | Muc2
Description
mucin 2 [Source:MGI Symbol;Acc:MGI:1339364]
Coordinates
chr7:148932523-148934076:+
Coord C1 exon
chr7:148932523-148932770
Coord A exon
chr7:148933379-148933562
Coord C2 exon
chr7:148933860-148934076
Length
184 bp
Sequences
Splice sites
3' ss Seq
CTCAGACATGTTGACTACAGGTA
3' ss Score
3.61
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GCTACTGCACTGGCTGGGGGGACCCACACTTTGTCACCTTCGATGGGCTCTACTACAGTTACCAGGGTAACTGTACCTATGTGCTGGTGGAGGAGATTACCCCCACAGTGGACAACTTTGGGGTCTACATTGACAACTACCACTGTGATGCCAATGACAAGGTGTCCTGCCCCCGCACACTTATTGTGCGCCACGAGACCCAGGAAGTACAGATCAAGACCGTGAGGATGATGCCCATTGAGGTGGAG
Seq A exon
GTACAGGTGAACAAGCAGTTAGTGGCTTTGCCCTACAAGAAGTATGGGCTGGAGGTATACGAGTCTGGCATCAACATTGTGGTGAACATCTCCAGGCTAGAAGCCAAGATCTCCTACAATGGCCTTTCTTTCTCCATCCGGCTGCCCTACAAACTGTTTGGCAACAACACAAAGGGCCAGTGTG
Seq C2 exon
GCACCTGCACCAACAATACTGCAGATGACTGTATCCTGCCCAGTGGGAAGATCATCTCTGACTGTGAAATTGCTGCTGACGAGTGGTTGGTGAATGACCCCTCCAAGCCACACTGTCCCCACAAAGGCCTCACCACCAAGCGTCCGGCCACCACGACACCAGGGCTTTCGCTTAATAACTGCACTGTGTCTCCTGTCTGCCACCTCATCATGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025515-'37-38,'37-37,38-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.068
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.3=96.4)
A:
PF0009420=VWD=FE(38.4=100)
C2:
PF0009420=VWD=PD(10.1=21.9),PF087426=C8=PU(17.6=17.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCCCACAGTGGACAACTT
R:
ATTCACCAACCACTCGTCAGC
Band lengths:
246-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: