HsaEX6000274 @ hg19
Exon Skipping
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7512]
Coordinates
chr11:1096325-1097917:+
Coord C1 exon
chr11:1096325-1096572
Coord A exon
chr11:1097182-1097365
Coord C2 exon
chr11:1097689-1097917
Length
184 bp
Sequences
Splice sites
3' ss Seq
CCATGGTGTGTCGGCCACAGGTG
3' ss Score
8.54
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GCTACTGCACGGGCTGGGGCGACCCGCACTATGTCACCTTCGACGGACTCTACTACAGCTACCAGGGCAACTGCACCTACGTGCTGGTGGAGGAGATCAGCCCCTCCGTGGACAACTTCGGAGTTTACATCGACAACTACCACTGCGATCCCAACGACAAGGTGTCCTGTCCCCGCACCCTCATCGTGCGCCACGAGACCCAGGAGGTGCTGATCAAGACCGTGCATATGATGCCCATGCAGGTGCAG
Seq A exon
GTGCAGGTGAACAGGCAGGCGGTGGCACTGCCCTACAAGAAGTACGGGCTGGAGGTGTACCAGTCTGGCATCAACTACGTGGTGGACATCCCCGAGCTGGGTGTCCTCGTCTCCTACAATGGCCTGTCCTTCTCCGTCAGGCTGCCCTACCACCGGTTTGGCAACAACACCAAGGGCCAGTGTG
Seq C2 exon
GCACCTGCACCAACACCACCTCCGACGACTGCATTCTGCCCAGCGGGGAGATCGTCTCCAACTGTGAGGCTGCGGCTGACCAGTGGCTGGTGAACGACCCCTCCAAGCCACACTGCCCCCACAGCAGCTCCACGACCAAGCGCCCGGCCGTCACTGTGCCCGGGGGCGGTAAAACGACCCCACACAAGGACTGCACCCCATCTCCCCTCTGCCAGCTCATCAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788-'38-38,'38-37,39-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.198
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(52.3=96.4)
A:
PF0009420=VWD=FE(39.9=100)
C2:
PF0009420=VWD=PD(10.1=20.8),PF087426=C8=PU(17.8=16.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGTGCTGGTGGAGGAGATC
R:
AGCCTCACAGTTGGAGACGAT
Band lengths:
242-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)