GgaEX1001647 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr5:14304883-14306539:-
Coord C1 exon
chr5:14306292-14306539
Coord A exon
chr5:14305221-14305404
Coord C2 exon
chr5:14304883-14305087
Length
184 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTTTATTTACTAGGTG
3' ss Score
10.12
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
GCTACTGCACTGGCTGGGGAGACCCACATTATATGACGTTTGATGGACTGTACTACAGCTATCAAGGGAATTGCACATATGTTCTTGTGGAAGAGATTGAAAAAAGAGTTGACAACTTTGGTGTCTACATTGATAACTACCATTGTGATGCACGGGATATAGTTTCCTGTCCACGAGCACTCATTGTGAGACATGAGACTCAGGAAGTGCGCATTGTAACAGTGAAACCAAATACCCTGGAAGTAGAG
Seq A exon
GTGACTGTAAACAAACAGCCTGTGGCTTTGCCTTATAAGAAATTTGGCTTGAGCGTCTATGAGTCAGGCATAAATCGTGTAGTGGAAATTCCTGAACTTAAAATGAATGTGTCCTTCAATGGCTTGTCATTTTCTATCAGAATGCCCTACAGCCTGTTTGGAAACAACACTCAAGGACAGTGTG
Seq C2 exon
GCATTTGCAATAACAACACGGCAGATGACTGCAGGTTGCCAAATGGAAATATTGCAGAAAACTGTGAAACTATGGCAGATTACTGGCAAGTTGTTGATCCCTCCAAACCACAGTGTTCTCCAGGTCTAGTTCCTACAAAAGCACCTAGCACAACGACAGGAAAGCCTTGCAAAGAATCTTCCCTCTGTGAGCTTCTTTGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006744-'50-56,'50-55,51-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.3=96.4)
A:
PF0009420=VWD=FE(38.4=100)
C2:
PF0009420=VWD=PD(10.1=23.2),PF087426=C8=PU(17.6=18.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTCCACGAGCACTCATTG
R:
TTGCAAGGCTTTCCTGTCGTT
Band lengths:
255-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]