MmuEX6016500 @ mm9
Exon Skipping
Gene
ENSMUSG00000061576 | Dpp6
Description
dipeptidylpeptidase 6 [Source:MGI Symbol;Acc:MGI:94921]
Coordinates
chr5:27588475-27709409:+
Coord C1 exon
chr5:27588475-27588901
Coord A exon
chr5:27693347-27693410
Coord C2 exon
chr5:27709295-27709409
Length
64 bp
Sequences
Splice sites
3' ss Seq
TCTCTGATTCCTGACTGCAGATG
3' ss Score
8.2
5' ss Seq
ACTGTGAGC
5' ss Score
4.2
Exon sequences
Seq C1 exon
GCGGCAGCGGACAGGAGGCGGTGGGGAAGCAGCACGCATCACTCGGGCCCCTGCCTGCACTCAGCCGCCAGTTGCCGGTTGCTAAGCAGTTATTGTTTCTGTGGCGATTGCAGAGGCTGTGGCTAATTGGAGAAGCCCCACTGAGCATCAGCGTCTTCTTCTGCCGAGCCTGTCTTTGCTCTTTGCATTTAAAGAGCAAACTAGGCTGCTCTACCCAGCTCCCTCCCCCCACCGCCCCCCAAAAACCTGGTGATTTTGGAAGTATGGACTAGAATCGCTTTCCTCCTCACCCTACCATTCTGATCCTGGTGCCTCCAAAGTCTCAGTCAAACCCCTTCTGTCTCTGGGGTGGCGAGTGCCCGGACAGACCATGACCACAGCCAAGGAGCCCAGCGCCTCAGGAAAATCTGTACAGCAGCAGGATCAG
Seq A exon
ATGCGATACAACCAGAGACCCCATTGTTCTGACTTCCCTAGCATGGAGGACTATACCTTGAACT
Seq C2 exon
GAGCTGGTGGGGAGTAATCCTCCACAGAGGAACTGGAAAGGAATCGCCATTGCGCTGCTCGTCATCCTTGTCATCTGCTCTCTGATTGTCACCTCAGTCATCCTGTTGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061576-'5-9,'5-8,6-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.138
Domain overlap (PFAM):
C1:
PF059157=DUF872=PU(22.9=84.2)
A:
NO
C2:
PF059157=DUF872=FE(54.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGGTGCCTCCAAAGTCT
R:
AGGATTACTCCCCACCAGCTC
Band lengths:
146-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: