MmuEX6016500 @ mm10
Exon Skipping
Gene
ENSMUSG00000061576 | Dpp6
Description
dipeptidylpeptidase 6 [Source:MGI Symbol;Acc:MGI:94921]
Coordinates
chr5:27261975-27382869:+
Coord C1 exon
chr5:27261975-27262361
Coord A exon
chr5:27366807-27366870
Coord C2 exon
chr5:27382755-27382869
Length
64 bp
Sequences
Splice sites
3' ss Seq
TCTCTGATTCCTGACTGCAGATG
3' ss Score
8.2
5' ss Seq
ACTGTGAGC
5' ss Score
4.2
Exon sequences
Seq C1 exon
ACTCGGGCCCCTGCCTGCACTCAGCCGCCAGTTGCCGGTTGCTAAGCAGTTATTGTTTCTGTGGCGATTGCAGAGGCTGTGGCTAATTGGAGAAGCCCCACTGAGCATCAGCGTCTTCTTCTGCCGAGCCTGTCTTTGCTCTTTGCATTTAAAGAGCAAACTAGGCTGCTCTACCCAGCTCCCTCCCCCCACCGCCCCCCAAAAACCTGGTGATTTTGGAAGTATGGACTAGAATCGCTTTCCTCCTCACCCTACCATTCTGATCCTGGTGCCTCCAAAGTCTCAGTCAAACCCCTTCTGTCTCTGGGGTGGCGAGTGCCCGGACAGACCATGACCACAGCCAAGGAGCCCAGCGCCTCAGGAAAATCTGTACAGCAGCAGGATCAG
Seq A exon
ATGCGATACAACCAGAGACCCCATTGTTCTGACTTCCCTAGCATGGAGGACTATACCTTGAACT
Seq C2 exon
GAGCTGGTGGGGAGTAATCCTCCACAGAGGAACTGGAAAGGAATCGCCATTGCGCTGCTCGTCATCCTTGTCATCTGCTCTCTGATTGTCACCTCAGTCATCCTGTTGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061576-'6-28,'6-17,12-28=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.132
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGGTGCCTCCAAAGTCT
R:
AGGATTACTCCCCACCAGCTC
Band lengths:
146-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types