GgaEX1020885 @ galGal4
Exon Skipping
Gene
ENSGALG00000012156 | DPP10
Description
dipeptidyl-peptidase 10 (non-functional) [Source:HGNC Symbol;Acc:HGNC:20823]
Coordinates
chr7:28775701-28827723:-
Coord C1 exon
chr7:28827628-28827723
Coord A exon
chr7:28813107-28813165
Coord C2 exon
chr7:28775701-28775795
Length
59 bp
Sequences
Splice sites
3' ss Seq
TGGCTTTTGTTCCATTTCAGAAC
3' ss Score
10.38
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
Exon sequences
Seq C1 exon
ATGAGCTTGCAAATTCTTCTGAAACCAGATTGTCCTTGGAAGATCTCTTCAGAAAAGAGTTCATAGTTCATAATCCAGAAGCCAAATGGATTAATG
Seq A exon
AACTGATGATGAAAATCCTGACAGATCCTCCACCACAGAAGTGTGAATGTGCTGATAAG
Seq C2 exon
ATACAGCAGTGGTGTATAAAGATAGGAATGGACATGTTATTGAACTGAATGTAGAAACAAATACAACTACATTATTATTGGAAAACACAACTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012156_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059157=DUF872=PD(21.1=36.4)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000019852fB6948
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGCAAATTCTTCTGAAACCA
R:
TCAGTTCAATAACATGTCCATTCCT
Band lengths:
141-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]