BtaEX0011979 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005235 | DPP10
Description
Bos taurus dipeptidyl-peptidase 10 (non-functional) (DPP10), mRNA. [Source:RefSeq mRNA;Acc:NM_001078070]
Coordinates
chr2:67533794-67742776:+
Coord C1 exon
chr2:67533794-67533889
Coord A exon
chr2:67716560-67716654
Coord C2 exon
chr2:67742702-67742776
Length
95 bp
Sequences
Splice sites
3' ss Seq
TCATATCTTTGTTGTTGCAGATA
3' ss Score
9.56
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
ATGAACTCACAAATTCATCAGAAACTAGATTGTCTTTAGAAGACCTCTTCAGGAAAGACTTTGTGCTTCATGATCCAGAGGCTCGGTGGATCAATG
Seq A exon
ATACAGATGTGGTGTATAAAAGCGAGAATGGACATGTCATTAAACTGAATATAGAAACAAATACTACCACATTATTATTGGAAAACACTACTTTT
Seq C2 exon
GTAACCTTCAAAGCATCAAGACATTCAGTTTCCCCAGATTTGAAATATGTTCTTCTGGCATATGATGTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005235_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTCACAAATTCATCAGAAACT
R:
TGTTTGACATCATATGCCAGAAGA
Band lengths:
169-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development