HsaEX0020822 @ hg19
Exon Skipping
Gene
ENSG00000175497 | DPP10
Description
dipeptidyl-peptidase 10 (non-functional) [Source:HGNC Symbol;Acc:20823]
Coordinates
chr2:116101393-116283548:+
Coord C1 exon
chr2:116101393-116101488
Coord A exon
chr2:116257086-116257180
Coord C2 exon
chr2:116283474-116283548
Length
95 bp
Sequences
Splice sites
3' ss Seq
GAATGTCTTTGTTGTTGCAGATA
3' ss Score
8.4
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
ATGAACTCACAAATTCGTCAGAAACCAGATTGTCTTTGGAAGACCTCTTTAGGAAAGACTTTGTGCTTCACGATCCAGAGGCTCGGTGGATCAATG
Seq A exon
ATACAGATGTGGTGTATAAAAGCGAGAATGGACATGTCATTAAACTGAATATAGAAACAAATGCTACCACATTATTATTGGAAAACACAACTTTT
Seq C2 exon
GTAACCTTCAAAGCATCAAGACATTCAGTTTCACCAGATTTAAAATATGTCCTTCTGGCATATGATGTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175497_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059157=DUF872=PD(17.1=36.4),PF0308811=Str_synth=PU(13.2=27.3)
A:
PF0308811=Str_synth=FE(53.4=100)
C2:
PF0308811=Str_synth=FE(41.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCACAAATTCGTCAGAAACCAGA
R:
CTGTTTGACATCATATGCCAGAAGG
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)