GgaEX0018287 @ galGal4
Exon Skipping
Gene
ENSGALG00000012156 | DPP10
Description
dipeptidyl-peptidase 10 (non-functional) [Source:HGNC Symbol;Acc:HGNC:20823]
Coordinates
chr7:28766498-28827723:-
Coord C1 exon
chr7:28827628-28827723
Coord A exon
chr7:28775701-28775795
Coord C2 exon
chr7:28766498-28766572
Length
95 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTGTTGTTGTTACAGATA
3' ss Score
9.31
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
ATGAGCTTGCAAATTCTTCTGAAACCAGATTGTCCTTGGAAGATCTCTTCAGAAAAGAGTTCATAGTTCATAATCCAGAAGCCAAATGGATTAATG
Seq A exon
ATACAGCAGTGGTGTATAAAGATAGGAATGGACATGTTATTGAACTGAATGTAGAAACAAATACAACTACATTATTATTGGAAAACACAACTTTT
Seq C2 exon
GTAACTTTCAAAGCATCGAGGTACTCAGTTTCACCAGACTTAAGATTTGTTCTTCTTGCATACGACGTAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012156_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059157=DUF872=PD(21.1=36.4)
A:
NO
C2:
PF0093016=DPPIV_N=PU(3.8=56.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGCAAATTCTTCTGAAACCA
R:
CTGTTTTACGTCGTATGCAAGA
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]