DreEX0028201 @ danRer10
Exon Skipping
Gene
ENSDARG00000076826 | dpp6a
Description
dipeptidyl-peptidase 6a [Source:ZFIN;Acc:ZDB-GENE-090918-4]
Coordinates
chr24:6746082-6781319:-
Coord C1 exon
chr24:6781221-6781319
Coord A exon
chr24:6747209-6747303
Coord C2 exon
chr24:6746082-6746156
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTTTTATCCTCTCCCTTTAGATA
3' ss Score
11.57
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
GTGAGGATGATAGCCTGGCCTTTAAGGAAAAAGTGACAGTGGAAGAAATCTTCAAGAAAGACTTCAAAGTTCACGACCCCAACGCTAAGTGGATCAGCA
Seq A exon
ATAATGAGCTCCTCTATCGTACCCGTGAAGGTGACGTGGTTCGCTTCAACATGGAGACAAACGAGAGCACGATCTTGGTGACAAACAGAAAGTTT
Seq C2 exon
GAAATGTACAAAGCCAGCAAATATGAAGTTTCCCCAGATATGAAACTCGTTCTGCTGGCCTACAACGTGCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076826-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059157=DUF872=PD(12.3=23.5)
A:
NO
C2:
PF0093016=DPPIV_N=PU(3.8=56.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGATGATAGCCTGGCCTT
R:
CACGTTGTAGGCCAGCAGAAC
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]