RnoEX6012095 @ rn6
Exon Skipping
Gene
ENSRNOG00000030547 | Dpp6
Description
dipeptidyl peptidase like 6 [Source:RGD Symbol;Acc:68402]
Coordinates
chr4:4267795-4346723:-
Coord C1 exon
chr4:4346625-4346723
Coord A exon
chr4:4290665-4290759
Coord C2 exon
chr4:4267795-4267869
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTCTATTTCCCTCTTGTAGATA
3' ss Score
11.53
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CGGAAGATACCAGTCTGTCTCAGAAGAAGAAGGTGACTGTGGAAGATCTTTTCAGTGAAGACTTCAAAATCCATGACCCAGAGGCAAAGTGGATAAGCG
Seq A exon
ATAAGGAATTCATCTACAGAGAACGGAAAGGGAGCGTCATACTGCGGAACGTTGAGACAAATAATTCCACGGTGTTAATAGAAGGCAAAAAAATT
Seq C2 exon
GAATCGTTAAGAGCCATCAGATATGAAATATCCCCAGATAAAGAGTATGCGTTGTTTTCCTATAATGTGGAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030547-'11-16,'11-14,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059157=DUF872=PD(21.9=47.1)
A:
NO
C2:
PF0093016=DPPIV_N=PU(23.0=56.0)
Main Skipping Isoform:
ENSRNOT00000045773fB4447
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGATACCAGTCTGTCTCA
R:
TCCACATTATAGGAAAACAACGCA
Band lengths:
170-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]