MmuEX6016497 @ mm9
Exon Skipping
Gene
ENSMUSG00000061576 | Dpp6
Description
dipeptidylpeptidase 6 [Source:MGI Symbol;Acc:MGI:94921]
Coordinates
chr5:27725454-27796025:+
Coord C1 exon
chr5:27725454-27725552
Coord A exon
chr5:27777728-27777822
Coord C2 exon
chr5:27795951-27796025
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTCCCTCTTGTAGATA
3' ss Score
12.28
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CGGAAGATACCAGTCTGTCTCAGAAGAAAAAAGTGACTGTGGAAGATCTCTTCAGTGAAGACTTCAAAATCCATGACCCAGAGGCAAAGTGGATAAGCA
Seq A exon
ATAAGGAATTCATCTACAGAGAACGGAAAGGGAGTGTCATACTGCGGAATGTTGAAACAAATAATTCCACGGTGTTAATAGAAGGCAAAAAAATT
Seq C2 exon
GAATCCTTGAGAGCCATCAGATATGAAATATCCCCAGATAAAGAGTATGTGCTGTTCTCCTATAATGTGGAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061576-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059157=DUF872=PD(20.0=41.2)
A:
NO
C2:
PF0093016=DPPIV_N=PU(3.8=56.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGATACCAGTCTGTCTCA
R:
GGCTCCACATTATAGGAGAACAGC
Band lengths:
173-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: