BtaEX6029687 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BMH9]
Coordinates
chr4:117333451-117411239:+
Coord C1 exon
chr4:117333451-117333549
Coord A exon
chr4:117396665-117396759
Coord C2 exon
chr4:117411138-117411239
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTTATCTCCTCTCTTGTAGATA
3' ss Score
11.13
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CGGAAGATAACAGTCTGTCTCAAAAGAAGAAGGTGACTGTGGAAGACCTCTTCAGTGAAGATTTCAAAATCCACGACCCCGAGGCTAAGTGGATAAGTG
Seq A exon
ATAAAGAATTCATCTACCGAGAGCAGAAAGGAAGTGTGATACTGCGGAATGTTGAAACAAATACTTCTACGGTGTTAATAGAAGGCAAAAAAATT
Seq C2 exon
GAATCATTAAGAGCCATCAGATATGAAATATCTCCAGATAGAGAGTACGCTCTTTTTTCATATAACGTGGAACCAGTGAGTACTCGTCTTTCCTATTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047979-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059157=DUF872=PD(21.1=44.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGGTGACTGTGGAAGACC
R:
AGGAAAGACGAGTACTCACTGGT
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]