DreEX6025949 @ danRer10
Exon Skipping
Gene
ENSDARG00000024744 | dpp6b
Description
dipeptidyl-peptidase 6b [Source:ZFIN;Acc:ZDB-GENE-070705-88]
Coordinates
chr2:12798486-12813762:-
Coord C1 exon
chr2:12813664-12813762
Coord A exon
chr2:12798649-12798761
Coord C2 exon
chr2:12798486-12798560
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCTTCCCTTCAAAGACA
3' ss Score
8.96
5' ss Seq
CAGGTTCTT
5' ss Score
3.26
Exon sequences
Seq C1 exon
TTGAAGATACCAGCCTGGCCTCCAAGCAGAAGGTCACAATCGAGGACATCTTCAGCGGCAAGCTCCAGGCACACAACCCTCAGGCAACGTGGCTCAGCG
Seq A exon
ACACTGAACTGCTGTACCATGACCATGATGGCAATGTGAAGATGCTGAACATTCAGACGAATTACAACAAGACTCTGGTGGAGAACAAGACATTTGAGAGTTTCCACAGCCAG
Seq C2 exon
GAAGCCTACAGACCAACCCAATATCAAGTGTCTCCAGATCTAAAATATGTCCTGTTGGCCTACAATATCATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024744-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0093016=DPPIV_N=PU(3.8=56.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAGATACCAGCCTGGCCT
R:
CGGCATGATATTGTAGGCCAAC
Band lengths:
174-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]