GgaEX6018397 @ galGal4
Exon Skipping
Gene
ENSGALG00000006314 | DPP6
Description
dipeptidyl-peptidase 6 [Source:HGNC Symbol;Acc:HGNC:3010]
Coordinates
chr2:7487845-7512481:+
Coord C1 exon
chr2:7487845-7487943
Coord A exon
chr2:7509568-7509662
Coord C2 exon
chr2:7512407-7512481
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCTTCTCTTTGCAGATA
3' ss Score
13.91
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
TTGAAGATAACAGCTTGTCTCAGAAGAAGAAGATAACAGTGGAAGATCTCTTCAGTGCTGATTTCAAAATTCATGACCCAGAGGCTAAATGGATAACTG
Seq A exon
ATAATGAATTCATTTATAGAAACCAGAATGGCACAGTGATTCTGAGGAATGTTGAAACTAACAATTCAACAGTATTAATAGAAAACAAAAAAATT
Seq C2 exon
GTCTCCTTAAAGGCTGTTCGATACGAAGTGTCACCTGACCGGGAATATGCACTTTTTGCTTTTAATGTTGAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006314-'6-9,'6-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059157=DUF872=PD(20.0=41.2)
A:
NO
C2:
PF0093016=DPPIV_N=PU(21.9=56.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGATAACAGCTTGTCTCAGA
R:
TGGTTCAACATTAAAAGCAAAAAGTG
Band lengths:
173-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]