HsaEX6011436 @ hg19
Exon Skipping
Gene
ENSG00000130226 | DPP6
Description
dipeptidyl-peptidase 6 [Source:HGNC Symbol;Acc:3010]
Coordinates
chr7:154172024-154264001:+
Coord C1 exon
chr7:154172024-154172122
Coord A exon
chr7:154237617-154237711
Coord C2 exon
chr7:154263927-154264001
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTCTACTTCCTCTCTTACAGATA
3' ss Score
11.59
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CGGAAGATAATAGTCTGTCTCAAAAGAAGAAGGTCACTGTAGAAGATCTCTTCAGTGAAGACTTCAAAATTCATGACCCCGAGGCTAAGTGGATAAGTG
Seq A exon
ATACAGAATTCATCTACAGAGAACAGAAAGGAACAGTGAGACTGTGGAATGTTGAAACAAATACTTCTACTGTCTTAATAGAAGGCAAAAAAATT
Seq C2 exon
GAATCATTAAGAGCCATCAGATATGAAATATCTCCAGATAGAGAGTATGCACTTTTTTCATACAATGTGGAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130226-'4-9,'4-8,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF118373=DUF3357=PD(26.7=58.8),PF118073=DUF3328=FE(26.0=100),PF059157=DUF872=PD(20.3=41.2)
A:
PF118073=DUF3328=FE(24.4=100)
C2:
PF0093016=DPPIV_N=PU(3.8=56.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGATAATAGTCTGTCTCAAAAG
R:
AGTGCATACTCTCTATCTGGAGA
Band lengths:
152-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)