MmuEX6026984 @ mm10
Exon Skipping
Gene
ENSMUSG00000036815 | Dpp10
Description
dipeptidylpeptidase 10 [Source:MGI Symbol;Acc:MGI:2442409]
Coordinates
chr1:123650288-123854261:-
Coord C1 exon
chr1:123854166-123854261
Coord A exon
chr1:123686221-123686315
Coord C2 exon
chr1:123650288-123650362
Length
95 bp
Sequences
Splice sites
3' ss Seq
GATTACCTTTGTTTTTGCAGATA
3' ss Score
10.12
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
ATGAACTAACAAATTCTTCAGAAACAAGACTGTCACTAGAGGAGCTTTTGGGGAAAGGATTCGGACTTCATAATCCAGAACCTCGGTGGATCAATG
Seq A exon
ATACAGTCGTGGTATATAAAACCAACAATGGACACGTCATGAAACTGAATACAGAATCAAATGCTTCCACATTGTTATTGGACAACTCAACTTTT
Seq C2 exon
GTAACGTTTAAAGCCTCCAGACACTCACTTTCCCCAGATTTAAAGTATGTTCTCCTGGCATACGACGTTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036815-'7-18,'7-16,10-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059157=DUF872=PD(23.3=42.4)
A:
NO
C2:
PF0093016=DPPIV_N=PU(3.8=56.0)
Main Skipping Isoform:
ENSMUST00000112603fB9080
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCTTCAGAAACAAGACTGTCACT
R:
TGCTTAACGTCGTATGCCAGG
Band lengths:
159-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types