GgaEX0018287 @ galGal3
Exon Skipping
Gene
ENSGALG00000012156 | DPP10
Description
NA
Coordinates
chr7:30866160-30928818:-
Coord C1 exon
chr7:30928723-30928818
Coord A exon
chr7:30875363-30875457
Coord C2 exon
chr7:30866160-30866234
Length
95 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTGTTGTTGTTACAGATA
3' ss Score
9.31
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
ATGAGCTTGCAAATTCTTCTGAAACCAGATTGTCCTTGGAAGATCTCTTCAGAAAAGAGTTCATAGTTCATAATCCAGAAGCCAAATGGATTAATG
Seq A exon
ATACAGCAGTGGTGTATAAAGATAGGAATGGACATGTTATTGAACTGAATGTAGAAACAAATACAACTACATTATTATTGGAAAACACAACTTTT
Seq C2 exon
GTAACTTTCAAAGCATCGAGGTACTCAGTTTCACCAGACTTAAGATTTGTTCTTCTTGCATACGACGTAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012156-'1-4,'1-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0093016=DPPIV_N=PU(3.8=56.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGCAAATTCTTCTGAAACCA
R:
CTGTTTTACGTCGTATGCAAGA
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]