MmuEX6026023 @ mm10
Exon Skipping
Gene
ENSMUSG00000026253 | Chrng
Description
cholinergic receptor, nicotinic, gamma polypeptide [Source:MGI Symbol;Acc:MGI:87895]
Coordinates
chr1:87206075-87206759:+
Coord C1 exon
chr1:87206075-87206214
Coord A exon
chr1:87206468-87206512
Coord C2 exon
chr1:87206650-87206759
Length
45 bp
Sequences
Splice sites
3' ss Seq
AACTCTCTTTTGTACCCCAGAAT
3' ss Score
6.69
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GGGCCCAGAGCCGCAACCAAGAGGAGCGTCTGCTTGCGGACCTGATGCGAAACTACGACCCCCACCTGCGGCCGGCTGAGCGCGACTCAGATGTGGTCAATGTCAGCCTGAAGCTTACCTTGACCAACCTCATCTCCCTG
Seq A exon
AATGAACGAGAGGAGGCCCTCACAACTAACGTCTGGATAGAGATG
Seq C2 exon
CAATGGTGCGACTATCGCCTGCGCTGGGACCCAAAAGACTACGAAGGCCTGTGGATATTGAGGGTGCCATCTACTATGGTCTGGCGGCCAGATATCGTCCTGGAGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026253-'1-16,'1-5,5-16=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=WD(100=48.2),PF0293118=Neur_chan_LBD=PU(3.6=4.5)
A:
PF0293118=Neur_chan_LBD=FE(10.1=100)
C2:
PF0293118=Neur_chan_LBD=FE(16.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGCGAAACTACGACCCC
R:
GTAGTCTTTTGGGTCCCAGCG
Band lengths:
141-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types