BtaEX6012186 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000045943 | CHRNG
Description
Bos taurus cholinergic receptor, nicotinic, gamma (muscle) (CHRNG), mRNA. [Source:RefSeq mRNA;Acc:NM_174273]
Coordinates
chr2:120988740-120989472:+
Coord C1 exon
chr2:120988740-120988879
Coord A exon
chr2:120989143-120989187
Coord C2 exon
chr2:120989363-120989472
Length
45 bp
Sequences
Splice sites
3' ss Seq
CCTCTGTTCTGCACCCCTAGAAT
3' ss Score
8.69
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GGGCCAAGGGCCGGAACCAGGAGGAGCGTCTGCTCGGGGACCTGATGCAAGGCTACAACCCCCACCTGAGACCTGCTGAGCACGATTCGGACGTGGTCAACGTCAGCCTGAAGCTCACGCTTACCAACCTCATCTCCCTG
Seq A exon
AATGAGCGAGAGGAGGCCCTCACCACCAACGTCTGGATAGAAATG
Seq C2 exon
CAGTGGTGTGACTACCGGCTTCGCTGGGACCCTCGAGACTACGGCGGCCTGTGGGTGCTTCGGGTGCCATCCACCATGGTGTGGCGGCCAGACATCGTGCTGGAGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045943-'2-2,'2-1,3-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.1=83.0)
A:
PF0293118=Neur_chan_LBD=FE(6.5=100)
C2:
PF0293118=Neur_chan_LBD=FE(16.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACGCTTACCAACCTCAT
R:
GTTCTCCAGCACGATGTCTGG
Band lengths:
136-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]