GgaEX1015452 @ galGal4
Exon Skipping
Gene
ENSGALG00000007906 | CHRNG
Description
acetylcholine receptor subunit gamma precursor [Source:RefSeq peptide;Acc:NP_001026739]
Coordinates
chr9:15080137-15081673:+
Coord C1 exon
chr9:15080137-15080191
Coord A exon
chr9:15080690-15080734
Coord C2 exon
chr9:15081576-15081673
Length
45 bp
Sequences
Splice sites
3' ss Seq
CCCCCTTCCTTCCCTGTCAGAAT
3' ss Score
10.21
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
ATGCGCTGCTCCGATCTCCTCCTCCTCTTCCTCCTCGCCTTCTGTGTCCTGCCAG
Seq A exon
AATGAGCGGGAGGAGACCCTCACCACCAATGTTTGGATCGAGATG
Seq C2 exon
GTCCCAGACATACAGCGCGAACGAAATCAACCTGCTGCTGACAGTGGAGGAAGGCCAGACCATAGAGTGGATCTTCATTGACCCCGAAGCCTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007906_MULTIEX1-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=FE(6.5=100)
C2:
PF0293118=Neur_chan_LBD=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGATCTCCTCCTCCTCTTCC
R:
AAGGCTTCGGGGTCAATGAAG
Band lengths:
138-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]