BtaEX6012178 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011390 | CHRND
Description
Bos taurus cholinergic receptor, nicotinic, delta (CHRND), mRNA. [Source:RefSeq mRNA;Acc:NM_174271]
Coordinates
chr2:120975355-120976617:+
Coord C1 exon
chr2:120975355-120975497
Coord A exon
chr2:120975940-120975984
Coord C2 exon
chr2:120976508-120976617
Length
45 bp
Sequences
Splice sites
3' ss Seq
GGCTTCCTGTTTGATTACAGAAA
3' ss Score
6.26
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCAGCTGGGGCTTGAACGAGGAGGAGCGGCTGATCCGGCACCTGTTTGAGGAGAAGGCCTACAACAAGGAACTGCGGCCCGCAGCGCACAAAGAGAGCGTGGAGATCTCCCTGGCTCTCACCCTCTCCAACCTCATCTCCCTG
Seq A exon
AAAGAAGTCGAAGAGACCCTCACCACGAATGTGTGGATCGAGCAG
Seq C2 exon
GGCTGGACAGACAGCCGGCTGCAGTGGGATGCAGAAGACTTTGGGAACATCAGCGTCCTGCGTCTGCCCGCTGACATGGTGTGGCTCCCAGAGATTGTGCTGGAGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011390-'1-4,'1-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.1=83.3)
A:
PF0293118=Neur_chan_LBD=FE(6.3=100)
C2:
PF0293118=Neur_chan_LBD=FE(16.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATCTCCCTGGCTCTCACC
R:
CACAATCTCTGGGAGCCACAC
Band lengths:
141-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]