MmuEX6026015 @ mm9
Exon Skipping
Gene
ENSMUSG00000026251 | Chrnd
Description
cholinergic receptor, nicotinic, delta polypeptide [Source:MGI Symbol;Acc:MGI:87893]
Coordinates
chr1:89087550-89088898:+
Coord C1 exon
chr1:89087550-89087704
Coord A exon
chr1:89088095-89088139
Coord C2 exon
chr1:89088789-89088898
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACCCTGTTGTTTGATTACAGAAA
3' ss Score
7.47
5' ss Seq
CATGTAAGG
5' ss Score
6.57
Exon sequences
Seq C1 exon
CCCTCCCAGGCAGTTGGGGCCTGAATGAGGAACAAAGGCTGATCCAGCACCTATTCAATGAGAAGGGCTACGACAAAGACCTGCGGCCGGTGGCTCGAAAGGAGGACAAAGTGGATGTCGCCCTAAGTCTCACCCTCTCCAACCTCATCTCCCTG
Seq A exon
AAAGAAGTGGAGGAGACCCTCACCACCAACGTGTGGATAGATCAT
Seq C2 exon
GCCTGGGTAGACAGCCGTCTACAGTGGGATGCCAACGACTTCGGGAACATCACTGTCCTGCGCCTGCCCCCTGACATGGTGTGGCTACCAGAGATTGTACTGGAGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026251-'1-4,'1-3,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.5=78.8)
A:
PF0293118=Neur_chan_LBD=FE(6.3=100)
C2:
PF0293118=Neur_chan_LBD=FE(16.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACAAAGTGGATGTCGCC
R:
TCTGGTAGCCACACCATGTCA
Band lengths:
146-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: