RnoEX0021235 @ rn6
Exon Skipping
Gene
ENSRNOG00000019527 | Chrnd
Description
cholinergic receptor nicotinic delta subunit [Source:RGD Symbol;Acc:2352]
Coordinates
chr9:94286855-94288171:+
Coord C1 exon
chr9:94286855-94287000
Coord A exon
chr9:94287381-94287425
Coord C2 exon
chr9:94288062-94288171
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACCCTCTTGTTTGATTACAGAAA
3' ss Score
7.59
5' ss Seq
CACGTAAGG
5' ss Score
7.47
Exon sequences
Seq C1 exon
GCAGCTGGGGCCTGAATGAGGAACAAAGGCTGATCCAGCACCTGTTTGAGGAAAAAGGCTACAACAAAGAACTTCGGCCGGTGGCTCGAAAGGAGGACATAGTGGATGTCGCCTTAAGTCTGACCCTCTCCAACCTCATCTCCCTG
Seq A exon
AAAGAAGTGGAGGAGACCCTCACCACCAATGTGTGGATAGATCAC
Seq C2 exon
GCATGGATAGACAGCCGGCTACAATGGAATGCCAACGAGTTTGGGAACATCACCGTCCTGCGCCTGCCCTCTGACATGGTGTGGCTACCAGAAATTGTACTGGAGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019527_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.5=83.7)
A:
PF0293118=Neur_chan_LBD=FE(6.3=100)
C2:
PF0293118=Neur_chan_LBD=FE(16.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCGCCTTAAGTCTGACCCT
R:
TCTGGTAGCCACACCATGTCA
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]