GgaEX1015447 @ galGal3
Exon Skipping
Gene
ENSGALG00000007899 | F1NJ26_CHICK
Description
NA
Coordinates
chr9:16706478-16707062:+
Coord C1 exon
chr9:16706478-16706623
Coord A exon
chr9:16706745-16706789
Coord C2 exon
chr9:16706953-16707062
Length
45 bp
Sequences
Splice sites
3' ss Seq
TATCCCCCACGTTATTGCAGAAA
3' ss Score
7.2
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTGGGCTCTGCGTTAACCAGGAGGAGCGGCTCATCCATCACCTCTTTGAGGAGAGAGGCTACAACAAGGAGGTGCGCCCCGTTGCCTCTGCTGATGAGGTTGTGGATGTCTACCTAGCCCTTACCCTCTCCAACCTCATCTCACTG
Seq A exon
AAAGAGGTGGACGAGACACTCACCACCAACGTATGGGTTGAACAA
Seq C2 exon
AGCTGGACTGATTACCGCCTGCAGTGGAACACATCTGAGTTTGGGGGCGTCGACGTGCTCCGCCTGCTGCCAGAGATGCTGTGGCTGCCTGAGATAGTCCTGGAGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007899-'1-2,'1-1,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.3=83.7)
A:
PF0293118=Neur_chan_LBD=FE(6.2=100)
C2:
PF0293118=Neur_chan_LBD=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTACAACAAGGAGGTGC
R:
GCCCCCAAACTCAGATGTGTT
Band lengths:
140-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]