GgaEX0011243 @ galGal3
Exon Skipping
Gene
ENSGALG00000007899 | F1NJ26_CHICK
Description
NA
Coordinates
chr9:16706021-16706789:+
Coord C1 exon
chr9:16706021-16706078
Coord A exon
chr9:16706478-16706623
Coord C2 exon
chr9:16706745-16706789
Length
146 bp
Sequences
Splice sites
3' ss Seq
CCTGACCTTGAGCCCCCCAGGTG
3' ss Score
1.72
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CACCGCATGGGGGACATGGCAGTGCTGCTGGCCTTGTTTGGGGCACTGGTGCTGTCGG
Seq A exon
GTGGGCTCTGCGTTAACCAGGAGGAGCGGCTCATCCATCACCTCTTTGAGGAGAGAGGCTACAACAAGGAGGTGCGCCCCGTTGCCTCTGCTGATGAGGTTGTGGATGTCTACCTAGCCCTTACCCTCTCCAACCTCATCTCACTG
Seq C2 exon
AAAGAGGTGGACGAGACACTCACCACCAACGTATGGGTTGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007899-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.3=83.7)
C2:
PF0293118=Neur_chan_LBD=FE(6.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGACATGGCAGTGCTG
R:
TCAACCCATACGTTGGTGGTG
Band lengths:
90-236
Functional annotations
There are 0 annotated functions for this event