MmuEX6026016 @ mm9
Exon Skipping
Gene
ENSMUSG00000026251 | Chrnd
Description
cholinergic receptor, nicotinic, delta polypeptide [Source:MGI Symbol;Acc:MGI:87893]
Coordinates
chr1:89087227-89088139:+
Coord C1 exon
chr1:89087227-89087317
Coord A exon
chr1:89087550-89087704
Coord C2 exon
chr1:89088095-89088139
Length
155 bp
Sequences
Splice sites
3' ss Seq
CACCCTACCCCTCTCCCCAGCCC
3' ss Score
8.35
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTGAAGGGAAGACAAACCCTAGTCAGTCAGAGGTGGGGGATGGCAGGGCCTGTGCTCACACTGGGGCTGCTGGCTGCCCTTGTTGTGTGTG
Seq A exon
CCCTCCCAGGCAGTTGGGGCCTGAATGAGGAACAAAGGCTGATCCAGCACCTATTCAATGAGAAGGGCTACGACAAAGACCTGCGGCCGGTGGCTCGAAAGGAGGACAAAGTGGATGTCGCCCTAAGTCTCACCCTCTCCAACCTCATCTCCCTG
Seq C2 exon
AAAGAAGTGGAGGAGACCCTCACCACCAACGTGTGGATAGATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026251-'0-3,'0-1,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.108 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.5=78.8)
C2:
PF0293118=Neur_chan_LBD=FE(6.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGACAAACCCTAGTCAGT
R:
TGATCTATCCACACGTTGGTG
Band lengths:
130-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: