RnoEX6040760 @ rn6
Exon Skipping
Gene
ENSRNOG00000019527 | Chrnd
Description
cholinergic receptor nicotinic delta subunit [Source:RGD Symbol;Acc:2352]
Coordinates
chr9:94286550-94287425:+
Coord C1 exon
chr9:94286550-94286601
Coord A exon
chr9:94286855-94287000
Coord C2 exon
chr9:94287381-94287425
Length
146 bp
Sequences
Splice sites
3' ss Seq
CCCTCTCCCAACCCTCCCAGGCA
3' ss Score
8.17
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATGGCAGGGCCTGTGCCCACACTGGGGCTGCTGGCTGCCCTTGTTGTGTGTG
Seq A exon
GCAGCTGGGGCCTGAATGAGGAACAAAGGCTGATCCAGCACCTGTTTGAGGAAAAAGGCTACAACAAAGAACTTCGGCCGGTGGCTCGAAAGGAGGACATAGTGGATGTCGCCTTAAGTCTGACCCTCTCCAACCTCATCTCCCTG
Seq C2 exon
AAAGAAGTGGAGGAGACCCTCACCACCAATGTGTGGATAGATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019527-'0-3,'0-1,1-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.5=83.7)
C2:
PF0293118=Neur_chan_LBD=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]