MmuEX6026016 @ mm10
Exon Skipping
Gene
ENSMUSG00000026251 | Chrnd
Description
cholinergic receptor, nicotinic, delta polypeptide [Source:MGI Symbol;Acc:MGI:87893]
Coordinates
chr1:87190607-87191766:+
Coord C1 exon
chr1:87190607-87190742
Coord A exon
chr1:87190975-87191129
Coord C2 exon
chr1:87191520-87191766
Length
155 bp
Sequences
Splice sites
3' ss Seq
CACCCTACCCCTCTCCCCAGCCC
3' ss Score
8.35
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CACCAGCACCTGTCCCCTTGCTTGCCTCATTCCACAGCCAACAGGCTGAAGGGAAGACAAACCCTAGTCAGTCAGAGGTGGGGGATGGCAGGGCCTGTGCTCACACTGGGGCTGCTGGCTGCCCTTGTTGTGTGTG
Seq A exon
CCCTCCCAGGCAGTTGGGGCCTGAATGAGGAACAAAGGCTGATCCAGCACCTATTCAATGAGAAGGGCTACGACAAAGACCTGCGGCCGGTGGCTCGAAAGGAGGACAAAGTGGATGTCGCCCTAAGTCTCACCCTCTCCAACCTCATCTCCCTG
Seq C2 exon
AAAGAAGTGGAGGAGACCCTCACCACCAACGTGTGGATAGATCATGTAAGGACACCCTGCCGAAGGTTCCAGGTCCCCTGGTGCTCACTTATGCTGGGGACCACAAGCTCCTATGGACACACCTTTGGGGGAGCTTGACTACAGAGAACCCAACTGCCCTTTTCCACTGAGGCCTCTACTAGCTCCGAGGACATGTCCTAGAAGGCTGGGGTTCCTCCGTGCTAAAATTGCCGCTGTGTCCCGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026251-'0-10,'0-2,1-10=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.5=78.8)
C2:
PF0293118=Neur_chan_LBD=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAGGCTGAAGGGAAGAC
R:
CTCTGTAGTCAAGCTCCCCCA
Band lengths:
245-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types