GgaEX1015447 @ galGal4
Exon Skipping
Gene
ENSGALG00000007899 | CHRND
Description
acetylcholine receptor subunit delta precursor [Source:RefSeq peptide;Acc:NP_001026488]
Coordinates
chr9:15076647-15077231:+
Coord C1 exon
chr9:15076647-15076792
Coord A exon
chr9:15076914-15076958
Coord C2 exon
chr9:15077122-15077231
Length
45 bp
Sequences
Splice sites
3' ss Seq
TATCCCCCACGTTATTGCAGAAA
3' ss Score
7.2
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTGGGCTCTGCGTTAACCAGGAGGAGCGGCTCATCCATCACCTCTTTGAGGAGAGAGGCTACAACAAGGAGGTGCGCCCCGTTGCCTCTGCTGATGAGGTTGTGGATGTCTACCTAGCCCTTACCCTCTCCAACCTCATCTCACTG
Seq A exon
AAAGAGGTGGACGAGACACTCACCACCAACGTATGGGTTGAACAA
Seq C2 exon
AGCTGGACTGATTACCGCCTGCAGTGGAACACATCTGAGTTTGGGGGCGTCGACGTGCTCCGCCTGCTGCCAGAGATGCTGTGGCTGCCTGAGATAGTCCTGGAGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007899-'3-4,'3-3,5-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.3=83.7)
A:
PF0293118=Neur_chan_LBD=FE(6.2=100)
C2:
PF0293118=Neur_chan_LBD=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTACAACAAGGAGGTGC
R:
GCCCCCAAACTCAGATGTGTT
Band lengths:
140-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]