MmuEX6028205 @ mm9
Exon Skipping
Gene
ENSMUSG00000032649 | Glt25d2
Description
glycosyltransferase 25 domain containing 2 [Source:MGI Symbol;Acc:MGI:2138232]
Coordinates
chr1:154336910-154347141:+
Coord C1 exon
chr1:154336910-154337029
Coord A exon
chr1:154342932-154343008
Coord C2 exon
chr1:154347035-154347141
Length
77 bp
Sequences
Splice sites
3' ss Seq
CTGTTTCTTCTATTTTTCAGTTG
3' ss Score
10.22
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GCATCCAGATGTACCTGTGCAACAAGGAACACTATGGCTACCTGCCCATCCCTCTGAAGCCCCACCAGACACTGCAGGAGGACGTCGAGAACCTCATCCATGTACAGATAGAAGCAATGA
Seq A exon
TTGACCATCCTCCAATGGAGCCTTCCCAGTTCGTGTCAGTTGTCCCTAAGTATCCAGACAAGATGGGATTTGATGAG
Seq C2 exon
ATTTTCATGATCAACCTCAAACGCAGGAAGGACAGGCGGGACAGGATGCTGCGCACACTCTACGAACAGGAGATCGAGGTCAAGATTGTCGAGGCCGTGGATGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032649-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
C2:
PF0175512=Glyco_transf_25=FE(18.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGCCCATCCCTCTGAAG
R:
GCCTCGACAATCTTGACCTCG
Band lengths:
177-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: