BtaEX0015839 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000035836 | GLT25D2
Description
Bos taurus glycosyltransferase 25 domain containing 2 (GLT25D2), mRNA. [Source:RefSeq mRNA;Acc:NM_001191302]
Coordinates
chr16:66467828-66480722:-
Coord C1 exon
chr16:66480603-66480722
Coord A exon
chr16:66471373-66471449
Coord C2 exon
chr16:66467828-66467934
Length
77 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCTTGTGTCTTCCAGTTG
3' ss Score
10.53
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GCATCCAGATGTACCTCTGCAACCGAGAGCACTACGGCTACCTGCCCATCCCCCTGAAGCCCCATCAGACCCTGGAGGAGGACGTCGAGAACCTCATCCATGTGCAGACAGAAGCGATGA
Seq A exon
TTGACGGTCCTCCAATGGAACCTTCCCAGTTTGTCTCAGTTGTCCCTAAATATCCAGACAAGATGGGATTTGATGAG
Seq C2 exon
ATTTTCATGATAAACCTCAAGCGCAGAAAGGACAGGCGAGACCGGATGTTACGCACCCTGTATGAACAGGAGATTGAGGTCAAGATTGTGGAGGCTGTGGATGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035836_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
C2:
PF0175512=Glyco_transf_25=FE(18.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATGTACCTCTGCAACCG
R:
TAACATCCGGTCTCGCCTGTC
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development