DreEX0003036 @ danRer10
Exon Skipping
Gene
ENSDARG00000058270 | COLGALT1 (1 of 2)
Description
collagen beta(1-O)galactosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:26182]
Coordinates
chr1:57282202-57283214:-
Coord C1 exon
chr1:57283095-57283214
Coord A exon
chr1:57282934-57283010
Coord C2 exon
chr1:57282202-57282308
Length
77 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTGTGTGTTTCCAGTGC
3' ss Score
9.49
5' ss Seq
GAGGTGACC
5' ss Score
5.57
Exon sequences
Seq C1 exon
AGGTTCAGATGTACATCTGCAACAGAGAGACGTATGGGTATTTCCCGGTGCCGCTGCGCTCCCAGAACAGCCTGCAGGATGAGGCGGAGAGCTTTCTGCACTCTCAGCTGGAGGTTATGG
Seq A exon
TGCGCAATCCTCCAATAGAGCCGTCCGTGTATCTGTCACTAATGCCAAAACAGACGGATAAAATGGGCTTCGATGAG
Seq C2 exon
GTGTTCATGATAAATCTCCTGAGGCGCTCAGACCGGCGCGAGCGCATGTTGAGGACGCTTTACGAGCAAGAGATCGCATGCAAGATCATCACAGCTGTAGATGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058270-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
C2:
PF0175512=Glyco_transf_25=FE(18.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACAGAGAGACGTATGGG
R:
GCTCGTAAAGCGTCCTCAACA
Band lengths:
170-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]