BtaEX6036974 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012678 | COLGALT1
Description
Bos taurus glycosyltransferase 25 domain containing 1 (COLGALT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001098955]
Coordinates
chr7:5476402-5481783:-
Coord C1 exon
chr7:5481664-5481783
Coord A exon
chr7:5476582-5476658
Coord C2 exon
chr7:5476402-5476508
Length
77 bp
Sequences
Splice sites
3' ss Seq
CGGCTTTGCTGCCCCCCCAGTGA
3' ss Score
6.04
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
AGGTCCAGATGTACGTCTGCAACAAGGAAGTGTATGGCTTTCTGCCGGTGCCACTGCGGTCACACAGCACCCTCCAGGACGAGGCCGAGAGCTTCATGCACGTGCAGCTGGAGGTCATGG
Seq A exon
TGAAGCACCCACCCTCGGAGCCCTCGCGGTTCATCTCAGTGCCTACCAAGACGCCAGACAAGATGGGCTTTGACGAG
Seq C2 exon
GTCTTCATGATCAACCTGAAGCGGCGGCAGGACCGGCGGGAACGCATGCTGCGGGCCCTGGAAGAGCAGGAGATAGCGTGCCGGCTGGTGGAGGCTGTGGATGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012678-'14-18,'14-16,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.154 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
C2:
PF0175512=Glyco_transf_25=FE(18.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACAAGGAAGTGTATGGCT
R:
ACGCTATCTCCTGCTCTTCCA
Band lengths:
182-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]